Publications


2017

Ekaterina Sviridova, Pavlina Rezacova, Alexey Bondar, Vaclav Veverka, Petr Novak, Gundolf Schenk, Dmitri I. Svergun, Ivana Kuta Smatanova & Ladislav Bumba (2017). Structural basis of the interaction between the putative adhesion-involved and iron-regulated FrpD and FrpC proteins of Neisseria meningitides. Scientific Reports 7, 1-14, doi:10.1038/srep40408, IF 5.47

2016

J. Brezovsky, P. Babkova, O. Degtjarik, A. Fortova, A. Gora, I. Iermak, P. Rezacova, P. Dvorak, I. Kuta Smatanova, Z. Prokop, R. Chaloupkova & J. Damborsky (2016). Engineering a de novo transport tunnel. ACS Catalysis 6 (11), 7597-7610. doi: 10.1021/acscatal.6b02081, IF 9.307

Oksana Degtjarik, Jiři Brynda, Olga Ettrichova, Michal Kuty, Dhiraj Sinha, Ivana Kuta Smatanova, Jannette Carey, Rüdiger Ettrich, David Řeha (2016). Quantum calculations indicate effective electron transfer between FMN and benzoquinone in a new crystal structure of E. coli WrbA. Journal of Physical Chemistry B 120 (22),  4867–4877. doi: 10.1021/acs.jpcb.5b11958, IF 3.187

2015

Howard Einspahr, Ivana Kuta Smatanova, Christian Betzel and Jeroen Mesters (2015).  Introduction to selected articles from the 15th ICCBM. Acta Crystallographica Section F 71 (7), 805. doi: 10.1107/S2053230X15012534, IF 0.647

Iermak, I., Degtjarik, O., Steffler, F., Sieber, V. & Kuta Smatanova, I. (2015).  Crystallization behaviour of glyceraldehyde dehydrogenase from Thermoplasma acidophilum. Acta Cryst. F 71 (12), 1475-1480. doi:10.1107/S2053230X15020270, IF 0,647

Csefalvay E, Lapkouski M, Guzanova A, Csefalvay L, Baikova T, Shevelev I, Bialevich V, Shamayeva K, Janscak P, Kuta Smatanova I, Panjikar S, Carey J, Weiserova M, Ettrich R (2015). Functional Coupling of Duplex Translocation to DNA Cleavage in a Type I Restriction Enzyme. PLoS ONE 10 (6), 1-21. doi:10.1371/journal.pone.0128700, IF 3,057

Veronika Liskova, David Bednar, Tatyana Prudnikova, Pavlina Rezacova, Tana Koudelakova, Eva Sebestova, Ivana Kuta Smatanova, Jan Brezovsky, Radka Chaloupkova, Jiri Damborsky (2015). Balancing the stability-activity trade-off by fine-tuning dehalogenase access tunnels. ChemCatChem 7 (4), 648 –659. doi: 10.1002/cctc.201402792, IF 4.724

2014

Radka Chaloupkova, Tatyana Prudnikova, Pavlina Rezacova, Zbynek Prokop, Tana Koudelakova, Lukas Daniel, Jan Brezovsky, Wakako Ikeda-Ohtsubo, Yukari Sato, Michal Kuty, Yuji Nagata, Ivana Kuta Smatanova & Jiri Damborsky (2014). Structural and functional analysis of a novel haloalkane dehalogenase with two halide-binding sites. Acta Cryst. D 70, 1884–1897. doi:10.1107/S1399004714009018, IF 2,512

Jan Sykora, Jan Brezovsky, Tana Koudelakova, Maryna Lahoda, Andrea Fortova, Tatsiana Chernovets, Radka Chaloupkova, Veronika Stepankova, Zbynek Prokop, Ivana Kuta Smatanova, Martin Hof, Jiri Damborsky (2014). Dynamics and hydration explain failed functional transformation in dehalogenase design. Nature Chemical Biology 10 (6),  428-430. doi:10.1038/nchembio.1502, IF 12.709

Ladislav Bumba, Ekaterina Sviridova, Ivana Kutá Smatanová, Pavlína Řezáčová and Václav Veverka (2014). Backbone resonance assignments of the outer membrane lipoprotein FrpD from Neisseria meningitidis. Biomol NMR Assign  8 (1), 53-55. doi: 10.1007/s12104-012-9451-5, IF 0,687

Maryna Lahoda, Jeroen R. Mesters, Alena Stsiapanava, Radka Chaloupkova, Michal Kuty, Jiri Damborsky and Ivana Kuta Smatanova (2014). Crystallographic analysis of 1,2,3–trichloropropane biodegradation by haloalkane dehalogenase DhaA31. Acta Cryst D 70, 209-217. doi:10.1107/S1399004713026254, IF 2,512

2013

I. Kishko, J. Carey, D. Reha, J. Brynda, R. Winkler, B. Harish, R. Guerra, O. Ettrichova, Z. Kukacka, O. Sheryemyetyeva, P. Novak, M. Kuty, I. Kuta Smatanova, R. Ettrich and M. Lapkouski (2013). 1.2 Å resolution crystal structure of Escherichia coli WrbA holoprotein. Acta Crystallographica Section D: Biological Crystallography 69 (9), 1748-1757. doi:10.1107/S0907444913017162, IF 2,512

Ivana Kutá Smatanová a Michal Kutý. Laboratorní cvičení z chemie. Vydal: JU v Českých Budějovicích (2013), 279 stran, ISBN 978-80-87437-51-3

Michal Kutý a Ivana Kutá Smatanová. Chemie v příkladech. Vydal: JU v Českých Budějovicích (2013), 269 stran, ISBN 978-80-87437-56-8

K. Tratsiak, O. Degtjarik, I. Drienovska, L. Chrast, P. Rezacova, M. Kuty, R. Chaloupkova, J. Damborsky and I. Kuta Smatanova (2013). Crystallographic analysis of new psychrophilic haloalkane dehalogenases: DpcA from Psychrobacter cryohalolentis K5 and DmxA from Marinobacter sp. ELB17. Acta Cryst. F 69 (6), 683-688. doi:10.1107/S1744309113012979, IF 0.647

Oksana Degtjarik, Radka Chaloupkova, Pavlina Rezacova, Michal Kuty, Jiri Damborsky and Ivana Kuta Smatanova (2013). Differences in crystallization of two LinB variants from Sphingobium japonicum UT26. Acta Cryst F 69 (3), 284-287. doi:10.1107/S1744309113002467, IF 0,647

Oksana Degtjarik, Radka Dopitova, Sandra Puehringer, Eliska Nejedla, Michal Kuty, Manfred Weiss, Jan Hejatko, Lubomir Janda and Ivana Kuta Smatanova (2013). Cloning, Expression, Purification, Crystallization and Preliminary X-ray Diffraction Analysis of AHP2, a signal transmitter protein from Arabidopsis thaliana. Acta Cryst F 69 (2), 158-161. doi:10.1107/S174430911205186X, IF 0,647

Koudelakova, T., Chaloupkova, R., Brezovsky, J., Prokop, Z., Sebestova, E., Hesseler, M., Khabiri, M., Plevaka, M., Kulik, D., Kuta Smatanova, I., Rezacova, P., Ettrich, R., Bornscheuer, U. T., Damborsky, J. (2013).  Engineering Enzyme Stability and Resistance to Organic Co-solvent by Access Tunnel Modification. Angewandte Chemie International Edition 52, 1959-1963 doi:10.1002/anie.201206708, IF 11.709, IF 11,709

2012

Kopecky V Jr, Kohoutova J, Lapkouski M, Hofbauerova K, Sovova Z, Ettrichova, O., Gonzales-Perez, S., Dulebo, A., Kaftan, D., Kuta Smatanova, I., Revuelta, J.L., Arellano, J.B., Carey, J., Ettrich R. (2012). Raman Spectroscopy Adds Complementary Detail to the High-Resolution X-Ray Crystal Structure of Photosynthetic PsbP from Spinacia oleracea. PLoS ONE 7 (10), 1-9. doi:10.1371/journal.pone.0046694, IF 3,057

Ivana Nemcovicova and Ivana Kuta Smatanova. Chapter 11: Alternative Crystallization Technique: Cross Influence Procedure (CIP). In the Crystallization and Materials Science of Modern Artificial and Natural Crystals. Edited by: Elena Borisenko, Publisher: InTech (2012),  Pages 249-276, ISBN 978-953-307-608-9

2011

Maryna Lahoda, Radka Chaloupkova, Alena Stsiapanava, Jiri Damborsky and Ivana Kuta Smatanova (2011). Crystallization and crystallographic analysis of the Rhodococcus rhodochrous NCIMB 13064 mutant DhaA31 and its complex with 1, 2, 3-trichloropropane. Acta Cryst F 67 (67) , 397-400. doi:10.1107/S1744309111001254, IF 0,647

Alena Stsiapanava, Radka Chaloupkova, Andrea Fortova, Jiri Brynda, Manfred Weiss, Jiri Damborsky and Ivana Kuta Smatanova (2011). Crystallization and preliminary X-ray diffraction analysis of the wild type haloalkane dehalogenase DhaA and the variant DhaA13 complexed with different ligands. Acta Cryst F 67 (2), 253-257. doi: 10.1107/S1744309110051286, IF 0,647

Prudnikova, Tatyana; Chaloupkova, Radka; Sato, Yukari; Nagata, Yuji; Degtjarik, Oksana; Kuty, Michal,; Rezacova, Pavlina; Damborsky, Jiri; Kuta Smatanova, Ivana(2011). Development of a Crystallization Protocol for the  DbeA1 Variant of Novel Haloalkane Dehalogenase from Bradyrhizobium elkani USDA94. Crystal Growth and Design 11  (2), 516-519. doi: 10.1021/cg1013363, IF 4,425

2010

E. Sviridova, L. Bumba, P. Řezacova, K. Prochazkova, D. Kavan, K. Bezouska, M. Kuty, P. Sebo, I. Kuta Smatanova (2010). Crystallization and preliminary crystallographic characterization of the iron-regulated outer membrane lipoprotein FrpD from Neisseria meningitidis. Acta Cryst F 66, 1119-1126. doi: 10.1107/S174430911003215X, IF 0,647

Stsiapanava, A., Dohnalek, J.,  Gavira, J. A., Kuty, M., Koudelakova, T., Damborsky, J. and Kuta Smatanova, I. (2010).  Atomic resolution studies of haloalkane dehalogenases DhaA04, DhaA14 and DhaA15 with engineered access tunnels. Acta Cryst D 66, 962-969. doi:10.1107/S09074449100027101, IF 2,512

T. Prudnikova, J. A. Gavira, P. Řezáčová, E. Pineda Molina, I. Hunalová, E. Sviridova, V. Shmidt, J. Kohoutová, M. Kutý, D. Kaftan, F. Vácha, J. M. García-Ruiz and I. Kutá Smatanová (2010). Towards the crystallization of photosystem II core complex from Pisum sativum L. Cryst. Growth Des. 10 (8), 3391-3396. doi: 10.1021/cg901593x, IF 4,425

2009 

Martin Klvana; Martina Pavlova; Tana Koudelakova; Radka Chaloupkova; Pavel Dvorak; Alena Stsiapanava; Michal Kuty; Ivana Kuta-Smatanova; Jan Dohnalek; Petr Kulhanek; Rebecca C. Wade; Jiri Damborsky (2009).  Pathways and Mechanisms for Product Release in the Engineered Haloalkane Dehalogenases Explored using Classical and Random Acceleration Molecular Dynamics Simulations. J. Mol. Biol. 392, 1339-1356. doi:10.1016/j.jmb.2009.06.076, IF 4,517

Julie Wolfova, Ivana Kuta Smatanova, Jiri Brynda, Jeroen R. Mesters, Mikalai Lapkouski, Michal Kuty, Antonino Natalello, Neal Chatterjee, Sy-Yeu Chern, Erin Ebbel, Angela Ricci, Rita Grandori, Rüdiger Ettrich, and Jannette Carey (2009). Structural organization of WrbA in apo- and holo-protein crystals. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1794 (9), 1288-1298. doi:10.1016/j.bbapap.2009.08.001, IF 3,66 (The cover picture of this issue was selected from our paper)

Jaroslava Kohoutová, Vladimír Kopecký Jr., Mikalai Lapkouski, Kateřina Hofbauerová, Žofie Sovová, Sergio González-Pérezc, Ivana Kutá Smatanová, José L. Revuelta, Juan B. Arellano, Rudiger Ettrich (2009). Structural analysis of extrinsic PsbP protein of PSII from Spinacea oleracea and its interaction with the oxygen-evolving complex. FEBS Journal 276, 146-147.  doi: 10.1111/j.1742-4658.2009.07049.x, IF 4,237

Mikalai Lapkouski, Santosh Panjikar, Pavel Janscak, Ivana Kuta Smatanova, Jannette Carey, Rudiger Ettrich, Eva Csefalvay (2009). Structure of the motor subunit and translocation model for EcoR124I restriction-modification complex. Nature Structural & Molecular Biology 16 (1), 94-5. doi:10.1038/nsmb.1523, IF 13,338

Tatyana Prudnikova, Tomas Mozga, Pavlina Rezacova, Radka Chaloupkova, Yukari Sato, Yuji Nagata, Jiri Brynda, Michal Kuty, Jiri Damborsky, and Ivana Kuta Smatanova (2009). Crystallisation and preliminary X-ray analysis of a novel haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94. Acta Cryst. F 65 (4), 353-356. doi:  10.1107/S1744309109007039 , IF 0,647

J. Kohoutová, I. Kutá Smatanová, J. Brynda, M. Lapkouski, J. L. Revuelta, J. B. Arellano, R. Ettrich (2009). Crystallization and preliminary crystallographic characterization of the extrinsic PsbP protein of photosystem II from Spinacia oleracea. Acta Cryst. F 65, 111-115. doi:10.1107/S1744309108040578, IF 0,647

J. Wolfová, J. Brynda, J. R. Mesters, R. Ettrich, J. Carey, I. Kutá Smatanová (2009). Structural changes of tetrameric flavoprotein WrbA upon flavin binding. Materials Structure 16 (2), 56-57. IF 2,453

2008

Julie Wolfová, Jiří Brynda, Jeroen R. Mesters, Jannette Carey, Rita Grandori and Ivana Kutá Smatanová (2008). Crystallographic study of Escherichia coli favoprotein WrbA, a new NAD(P)H-dependent guinine oxidoreductase. Materials Structure 15 (1), 55-57.  IF 2,453

Alena Stsiapanava, Tana Koudelakova, Mikalai Lapkouski, Martina Pavlova, Jiri Damborsky and Ivana Kuta Smatanova (2008). Crystals of DhaA mutants from Rhodococcus rhodochrous NCIMB 13064 diffracted to ultra high resolution: crystallization and preliminary diffraction analysis. Acta Cryst. F 64, 137-140. doi:10.1107/S1744309108002066, IF 0,647

2007

Ivana Tomčová and Ivana Kutá Smatanová (2007). Copper co-crystallization and divalent metal salts cross-influence effect – a new optimisation tool improving crystal morphology and diffraction quality. Journal of Crystal Growth 306 (2), 383-389. doi: 10.1016/j.jcrysgro.2007.05.054, IF 1,462

Julie Wolfová, Jeroen R. Mesters, Jiří Brynda, Rita Grandori, Antonino Natalello, Jannette Carey and Ivana Kutá Smatanová (2007). Crystallization and preliminary diffraction analysis of E. coli WrbA in complex with its cofactor flavin mononucleotide. Acta Cryst. F 63 (7), 571-575.  doi:10.1107/S1744309107026103, IF 0,647

M. Lapkouski, S. Panjikar, I. Kuta Smatanova and E. Csefalvay (2007). Purification, crystallization and preliminary X-ray analysis of the HsdR subunit of the EcoR124I endonuclease from E. coli. Acta Cryst. F 63 (7), 582-585. doi:  10.1107/S174430910702622X, IF  0,647

Jannette Carey, Jiří Brynda, Julie Wolfová, Rita Grandori, Tobias Gustavsson, Rudiger H. Ettrich and Ivana Kutá Smatanová (2007). WrbA bridges bacterial flavodoxins and eukaryotic NAD(P)H:quinone oxidoreductases. Protein Science  16 (10), 2301-2305. doi:  10.1110/ps.073018907, IF 3,039 (The cover picture of this issue was selected from our paper)

Ivana Tomčová and Ivana Kutá Smatanová (2007). Cross-crystallization as a new optimization tool of crystallization procedures. Materials Structure 14 (1), 3-5. doi: 10.1107/S1744309106027710, IF 2,453 (The cover picture of this issue was selected from our paper)

Tatyana Prudnikova, Michal Kutý, José A. Gavira, Peter Palenčár, František Vácha, Pavlína Řezáčová, Juan M. Garcia-Ruiz and Ivana Kutá Smatanová (2007). Crystallization and structure-functional study of the photosystem II from higher plants. Materials Structure 14 (1), 5-7. doi:10.1038/sj.embor.embor923, IF 2,453

2006

Ivana Kutá Smatanová, José A. Gavira, Pavlína Řezáčová, František Vácha, and Juan M. García-Ruiz (2006). New techniques for membrane protein crystallization tested on photosystem II core complex of Pisum sativum. Photosynthesis Research 90 (3), 255-259. doi: 10.1007/s11120-007-9131-y, IF 4,112

Ivana Tomčová, Rui Miguel Mamede Branca, Gabriella Bodó, Csaba Bagyinka, and Ivana Kutá Smatanová (2006). Cross-crystallization and preliminary diffraction analysis of a novel di-heme cytochrome c4. Acta Cryst. F 62, 820-824. doi:10.1107/S1744309106027710, IF 0,647

2005

Julie Wolfova, Rita Grandori, Erika Kozma, Neal Chatterjee, Jannette Carey and Ivana Kuta Smatanova (2005). Crystallization of the flavoprotein WrbA optimized by using additives and gels. Journal of Crystal Growth 284 (3-4), 502-505. doi:10.1016/j.jcrysgro.2005.07.043, IF 1,462

2002

T. Hogg, I. Kuta Smatanova, K. Bezouska, N. Ulbrich and R. Hilgenfeld (2002). Sugar-mediated lattice contacts in crystals of a plant glycoprotein. Acta Cryst. D 58, 1734-1739. doi:10.1107/S0907444902014506, IF 2,512

Aaron J. Oakley, Zbynek Prokop, Michal Bohac, Jan Kmunicek, Tomas Jedlicka, Marta Monincova, Ivana Kuta Smatanova, Yuji Nagata, Jiri Damborsky and Matthew C.J. Wilce (2002). Exploring the structure and activity of Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26: Evidence for product and water mediated inhibition. Biochemistry 41 (15), 4847-4855. doi:10.1021/bi015734i, IF 2,876

2000

Marek, J., Vevodova, J., Kuta Smatanova, I., Nagata, J., Svensson, L.A, Newman, J., Takagi, M. and Damborsky, J. (2000). Crystal Structure of the Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26. Biochemistry 39 (46), 14082-14086. doi:10.1021/bi001539c,  IF 2,876

Schwendt, P., Svancarek, P., Smatanova, I. and Marek, J. (2000). Stereospecific formation of alpha-Hydroxylato Oxo Peroxo Complexes of Vanadium(V). Crystal Structure of  (NBu4)2[V2 O2(O2)2 (L-lact)2].2H2O and (NBu4)2[V2 O2(O2)2 (D-lact)(L-lact)].2H2O. Journal of Inorganic Biochemistry 80, 59-64. IF 3,205

Smatanova, I.K., Marek, J., Svancarek, P., Schwendt, P. (2000). Bis(tetra-n-butylammonium)Bis[(mandelato) oxo(peroxo)vanadate(V)] mandelic acid solvate. Acta Cryst. C 56 (2), 154-155. doi:10.1107/S0108270199013475, IF 0,479

Svancarek, P., Schwendt, P., Tatiersky, J., Smatanova, I. and Marek, J. (2000). Oxo Peroxo Glycolato Complexes of Vanadium (V). Crystal Structure of  (NBu4)2[V2O2(O2)2(C2H2O3)2].H2O. Monatshefte für Chemie 131, 145-154. IF 1,131

1999

Smatanova, I., Nagata, Y., Svensson, L. A., Takagi, M. and Marek, J. (1999). Crystallization and preliminary X-ray diffraction analysis of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. Acta Cryst. D 55, 1231-1233. IF 2,512

1998

Smatanova, I., Marek, J., Svancarek, P., Schwendt, P. (1998). Bis(tetra-n-butylammonium) Bis[(methyllactato) dioxovanadate(V)] Dihydrate. Acta Cryst. C 54, 1249 1251. IF 0,479

1997

Svancarek, P., Smatanova, I., Schwendt, P., Marek, J. (1997). Vanadium (V) peroxo complexes with alpha-hydroxycarboxylates as heteroligands. Chemické listy, 91 (9), 632-632. IF 0,279